Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs4873558 | chr8:52437547 | G/T | 0.00012 | 483 | 14.92 | 18.03 | 22.6 | KM Plot |
| THCA | rs4873797 | chr8:144571187 | T/C | 3.04E-9 | 479 | 16.67 | 14.77 | 12.67 | KM Plot |
| THCA | rs4873802 | chr8:144620855 | C/A | 3.12E-11 | 484 | 16.57 | 15.07 | 6.07 | KM Plot |
| THCA | rs4874140 | chr8:144571841 | C/G | 2.98E-9 | 480 | 16.67 | 14.75 | 12.67 | KM Plot |
| THCA | rs4874144 | chr8:144608418 | G/T | 6.47E-11 | 480 | 16.3 | 15.83 | 5.93 | KM Plot |
| THCA | rs4874149 | chr8:144631988 | G/A | 8.79E-10 | 468 | 16.2 | 15.83 | 7 | KM Plot |
| THCA | rs4901898 | chr14:59602914 | G/C | 4.89E-10 | 486 | 15.93 | 16.2 | 5.8 | KM Plot |
| THCA | rs4901902 | chr14:59617080 | A/C | 5.31E-10 | 484 | 15.9 | 16.48 | 6.83 | KM Plot |
| THCA | rs4901904 | chr14:59624317 | C/T | 4.68E-10 | 486 | 15.9 | 16.23 | 6.83 | KM Plot |
| THCA | rs4910600 | chr11:4166514 | A/G | 1.74E-7 | 490 | 19.05 | 13.9 | 16.38 | KM Plot |
| THCA | rs4910862 | chr11:3935874 | A/G | 0.000218 | 484 | 19.55 | 14.98 | 15.9 | KM Plot |
| THCA | rs4910893 | chr11:4161230 | A/G | 1.74E-7 | 490 | 19.05 | 13.9 | 16.38 | KM Plot |
| THCA | rs4910894 | chr11:4161294 | C/T | 1.74E-7 | 490 | 19.05 | 13.9 | 16.38 | KM Plot |
| THCA | rs4910895 | chr11:4161430 | C/A | 1.74E-7 | 490 | 19.05 | 13.9 | 16.38 | KM Plot |
| THCA | rs4910896 | chr11:4161556 | T/C | 1.74E-7 | 490 | 19.05 | 13.9 | 16.38 | KM Plot |